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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48752880_48753412_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48752880 - 48753412
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
ACTTTTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTTTGTAACT
Flanking Amino Acid:
FEKNVWAFLKVNFEEDSRAK
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
72.9
0.52
1.1
76.6
35.9
Minor 5ss
42.6
-0.8
3
57.6
46.6
Minor BPS
62.2
0.46
2
82.56
39.6

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638