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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48758994_48759685_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48758994 - 48759685
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GTGGTCTGACCA
Flanking Amino Acid:
KKTFNISVSGDVDGLITQAL
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
46.6
-0.2
1.8
56.12
43.1

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638