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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48759865_48761989_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48759865 - 48761989
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGGCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
AAGATCTTAACT
Flanking Amino Acid:
FVKMQSKITRLITAVVTKNW
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
70
0.45
0.9
60.9
40.2
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
69.2
0.68
1.3
76.2
40

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638