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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48765089_48768440_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48765089 - 48768440
Intron Length:
3352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCGTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TAAACCCTACCT
Flanking Amino Acid:
QAPAQQYYQQGDNPPPPGFI
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.6
0.55
0.9
67.9
37.1
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
50
0.08
2
72.12
43.8

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638