Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48769344_48773072_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48769344 - 48773072

Intron Length:

3729

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGCGCT

5'SS Class:

major

3'SS Sequence:

CTTTCTGTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

AGGTACTTACCG

Flanking Amino Acid:

ASDLPASQRTGPQNGWNDPP

Intron Amino Acid Position:

1003

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.3

62.4

42.4

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

0.67

0.8

72.4

37.7

Minor 5ss

40.5

-1.1

3.2

57.1

47.1

Minor BPS

49.7

-0.1

1.9

55.62

45.2

Associated Gene:

Gene:

SEC31A

Ensembl Gene ID:

ENSAPLG00000010192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010704

48744081 - 48777718

33638