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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48810345_48810459_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48810345 - 48810459
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTGTCTTAACA
Flanking Amino Acid:
SRYHQIGSGKCEIKVAQPKE
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.6
0.62
0.9
73.2
36
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
74.7
0.77
1.3
78.35
38.8

Associated Gene:

Gene:
HNRNPDL
Ensembl Gene ID:
ENSAPLG00000011774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012282
48808640 - 48812182
3543