About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48811539_48811722_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48811539 - 48811722
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATG
Flanking Amino Acid:
GYGPGYTDYSGQQSTYGKAS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.9
81.6
35
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
49.7
-0.1
1.9
61.64
41.7

Associated Gene:

Gene:
HNRNPDL
Ensembl Gene ID:
ENSAPLG00000011774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012282
48808640 - 48812182
3543