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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48817720_48818825_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48817720 - 48818825
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TGTTCTCTACCA
Flanking Amino Acid:
IREYFGGFGEVESIELPMDN
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
77.6
0.62
0.9
70.9
39.8
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
55.8
0.18
2
72.69
39.3

Associated Gene:

Gene:
HNRNPD
Ensembl Gene ID:
ENSAPLG00000031205
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048447
48812203 - 48820264
8062