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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48827180_48827752_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48827180 - 48827752
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
GCCTTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGGCTCCTAACG
Flanking Amino Acid:
TLYRTRYNIPGSICSDYCIT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
61
44
Major BPS
72
0.55
1
71.8
31.4
Major PPT
79
0.65
0.8
72.9
32
Minor 5ss
28.9
-2.4
2.9
34.4
41
Minor BPS
51.4
-0
1.8
58.19
43.1

Associated Gene:

Gene:
PLAC8
Ensembl Gene ID:
ENSAPLG00000020439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039427
48826892 - 48827824
933