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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4882730_4886080_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4882730 - 4886080
Intron Length:
3351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CGATGTTTATTT
Flanking Amino Acid:
AAINQILGRRWHALSREEQA
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
46.6
-0.1
2
60.72
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028119
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017525
4879693 - 4891082
11390