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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48833379_48836213_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48833379 - 48836213
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGATGG
5'SS Class:
major
3'SS Sequence:
TGTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TAATACTGGAAT
Flanking Amino Acid:
AAVGAHLAHQIYTLDIDKPE
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
57.2
42.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
82.7
0.74
0.9
76.8
37.3
Minor 5ss
39.8
-1.1
2.8
48.3
47.3
Minor BPS
48.7
-0
1.8
68.28
41.6

Associated Gene:

Gene:
COQ2
Ensembl Gene ID:
ENSAPLG00000012017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012510
48833223 - 48840309
7087