Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48842120_48842508_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48842120 - 48842508

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

GGTGTCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTGCAA

U12 Branch Point Sequence:

CTGGCTGCAACG

Flanking Amino Acid:

LPHGKESILSRRVQLNGRLL

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

44.3

-0.3

1.5

51.3

44.2

Major PPT

63.8

0.31

1.1

58.4

43.1

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

41.8

-0.7

2.2

46.43

46.9

Associated Gene:

Gene:

HPSE

Ensembl Gene ID:

ENSAPLG00000012084

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012614

48841960 - 48847017

5058