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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48844417_48844544_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
48844417 - 48844544
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
ACCGGGGTTGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
CTGCCCCAAACC
Flanking Amino Acid:
PRKHTQHLLRSFLKSGGKVI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
58.9
0.2
1.1
49.3
43.3
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
47.7
-0.1
2
60.47
44.7

Associated Gene:

Gene:
HPSE
Ensembl Gene ID:
ENSAPLG00000012084
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012614
48841960 - 48847017
5058