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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48845943_48846841_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48845943 - 48846841
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCCCTGTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TCTCAGTTAGCT
Flanking Amino Acid:
ARQPRFITLLSNPKLRTLAR
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
67.1
0.39
0.9
59.7
35.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.3
-0.2
2.4
70.43
46

Associated Gene:

Gene:
HPSE
Ensembl Gene ID:
ENSAPLG00000012084
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012614
48841960 - 48847017
5058