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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48854294_48854587_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48854294 - 48854587
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
GTTTTATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGAGTTCTAACT
Flanking Amino Acid:
KKASGQAIRKSVDSASVNRL
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.5
0.62
0.8
70.3
40.3
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
51
0.11
1.8
69.65
41.3

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012840
48850953 - 48864960
14008