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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48856386_48857193_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48856386 - 48857193
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATTCCCATACAT
Flanking Amino Acid:
ITRLGKAAYKGSIDLSYCNL
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
71.3
0.48
0.9
62.9
43
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
49.6
0.05
2
74.67
41.3

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012840
48850953 - 48864960
14008