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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48858045_48858350_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48858045 - 48858350
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACTTTA
5'SS Class:
major
3'SS Sequence:
GGGACTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATCT
Flanking Amino Acid:
LIVQEKDKHLVQDLVTSPLE
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
76.8
34.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
66.1
0.36
1
62.1
44.2
Minor 5ss
49.5
-0
2.5
63.9
42.7
Minor BPS
74.7
0.85
1.5
88.84
35.8

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012840
48850953 - 48864960
14008