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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48858493_48859284_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48858493 - 48859284
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
LAAGVNLPARRVILRAPYVA
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.1
73.5
37.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.4
0.66
1
74.1
39.5
Minor 5ss
30.9
-2.2
2.7
35.9
40.8
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012840
48850953 - 48864960
14008