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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48859525_48859986_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48859525 - 48859986
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TCTTTCTCAAAG
Flanking Amino Acid:
VASMVCKYLNKEFRSHREKE
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
69.7
35.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
76.1
0.59
1
78.1
28.1
Minor 5ss
42.1
-0.9
2.9
53.6
37.6
Minor BPS
58.2
0.12
1.7
64.47
43.3

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012840
48850953 - 48864960
14008