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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48861577_48862052_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48861577 - 48862052
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTCATCTCAACT
Flanking Amino Acid:
MTLAKILYTSKSTHIVGMSA
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.4
37.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
37.7
-1.4
3.1
51.9
39.9
Minor BPS
58.2
0.34
1.6
72.3
44.6

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012840
48850953 - 48864960
14008