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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48862729_48863319_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48862729 - 48863319
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGGAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
LPYVAIVQEKVWGLSSFGIE
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.3
67.5
39.2
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
80
0.67
0.9
77.6
35.5
Minor 5ss
33.1
-1.9
2.9
39.5
46
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
HELQ
Ensembl Gene ID:
ENSAPLG00000012292
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025725
48861952 - 48864960
3009