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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48865825_48866211_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48865825 - 48866211
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TCTTTTTTAATA
Flanking Amino Acid:
GIKVDYKNVQLLSQFVSPYT
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
82.8
0.74
0.8
81
29.6
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
76
0.81
1.1
78
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012544
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013065
48865009 - 48866801
1793