Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48866270_48866582_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48866270 - 48866582

Intron Length:

313

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TACTGTTCAACT

Flanking Amino Acid:

TGRIYGRHITGLCNKKQKEI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

86.4

0.82

0.7

85.6

29.2

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

53.5

0.19

73.01

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013065

48865009 - 48866801

1793