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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48867946_48867984_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
48867946 - 48867984
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTTGAGAG
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AGGTCTTCAACT
Flanking Amino Acid:
KKNHQNKIGSREKKDHPEEP
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.2
53.5
37.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
33.9
-1.8
3.2
39.6
40.3
Minor BPS
64.1
0.52
1.5
75.5
41.1

Associated Gene:

Gene:
ABRAXAS1
Ensembl Gene ID:
ENSAPLG00000012556
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013081
48867518 - 48873999
6482