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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48869466_48870382_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48869466 - 48870382
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATCAGT
5'SS Class:
major
3'SS Sequence:
TATGCTTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACTT
Flanking Amino Acid:
LEHALHRPQEGLFQKVPLVV
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
65.5
45.9
Major BPS
100
1.24
0.5
100
0
Major PPT
72.3
0.5
1.1
75.7
38.1
Minor 5ss
40.7
-1
2.9
49.6
46.4
Minor BPS
60.6
0.41
1.9
84.17
37

Associated Gene:

Gene:
ABRAXAS1
Ensembl Gene ID:
ENSAPLG00000012556
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013081
48867518 - 48873999
6482