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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48870577_48871220_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48870577 - 48871220
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
CTTCTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CATTAAAGAACT
Flanking Amino Acid:
LKKILSGCKKNVIGWYKFRR
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.4
0.73
0.8
76.6
32
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
44.3
-0.3
2.1
65.97
43.4

Associated Gene:

Gene:
ABRAXAS1
Ensembl Gene ID:
ENSAPLG00000012556
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013081
48867518 - 48873999
6482