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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4887080_4890993_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4887080 - 4890993
Intron Length:
3914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAC
U12 Branch Point Sequence:
GGTTATAGACCT
Flanking Amino Acid:
GVGQITPPLGWFSHHMIPGP
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
32.3
Major BPS
61.5
0.29
1
58.7
38.1
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
40.7
-1
3.1
54.8
43.3
Minor BPS
41.6
-0.5
2
60.65
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028119
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017525
4879693 - 4891082
11390