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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_490088_490314_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
490088 - 490314
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAGCT
5'SS Class:
major
3'SS Sequence:
CTTCATTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATCCTTCATT
Flanking Amino Acid:
MQWSSWEADKVISSVQLTSP
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
70.3
33.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
78.4
0.64
0.8
73.5
31.1
Minor 5ss
33.7
-1.9
3.4
47.8
47.9
Minor BPS
68.4
0.66
1.7
82.12
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625