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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_490422_490507_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
490422 - 490507
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
ATATTTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCTGCATGACT
Flanking Amino Acid:
FIKESIVDLSPLALNAHSEV
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
68.9
38
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76.7
0.6
0.9
70.1
40.5
Minor 5ss
33.9
-1.8
3.2
44.6
43.6
Minor BPS
55.9
0.27
2.1
80.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625