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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49058575_49061040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49058575 - 49061040
Intron Length:
2466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTGAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGATATTTATTT
Flanking Amino Acid:
YHYVTNKPRNRGEPMQGVKM
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.2
86.9
30.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.2
0.52
1
67.2
42.9
Minor 5ss
37.6
-1.4
3
50.6
39.2
Minor BPS
52.7
0.16
1.7
70.48
40.6

Associated Gene:

Gene:
MYOZ2
Ensembl Gene ID:
ENSAPLG00000012707
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013227
49053812 - 49070667
16856