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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49063149_49070435_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49063149 - 49070435
Intron Length:
7287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTAATATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATTTAATT
Flanking Amino Acid:
PELPDYRSFNRVATPFGGFE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.2
0.52
0.9
65.7
39.8
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
70
0.71
1.5
85.64
34.4

Associated Gene:

Gene:
MYOZ2
Ensembl Gene ID:
ENSAPLG00000012707
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013227
49053812 - 49070667
16856