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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4908727_4910568_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4908727 - 4910568
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAC
U12 Branch Point Sequence:
GGTTATAGACCT
Flanking Amino Acid:
SSLSVDPSMSRFSHHMIPGP
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
61.5
0.29
1
58.7
38.1
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
41.6
-0.5
2
60.65
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007492
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007820
4902666 - 4946867
44202