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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49096385_49098613_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49096385 - 49098613
Intron Length:
2229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCATCTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CGTTACTTATTT
Flanking Amino Acid:
NSCFLNSAVQVLWQLDIFRR
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
74.4
0.55
0.9
68.5
37.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56.8
0.29
1.8
73.57
43.4

Associated Gene:

Gene:
USP53
Ensembl Gene ID:
ENSAPLG00000027499
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027806
49096241 - 49106975
10735