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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49102706_49104177_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49102706 - 49104177
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATCAGTT
Flanking Amino Acid:
GFMDDAAECFENILERIHFH
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
47.7
-0
2
67.99
42.9

Associated Gene:

Gene:
USP53
Ensembl Gene ID:
ENSAPLG00000027499
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027806
49096241 - 49106975
10735