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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49104913_49105725_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49104913 - 49105725
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCCTTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
GTCACCACACTT
Flanking Amino Acid:
NTADDYRKCPSNCGQKIKIR
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
79.6
0.67
0.7
72.8
32.1
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
42.3
-0.5
2
58.73
44.3

Associated Gene:

Gene:
USP53
Ensembl Gene ID:
ENSAPLG00000027499
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027806
49096241 - 49106975
10735