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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49130879_49148241_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49130879 - 49148241
Intron Length:
17363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
IDAVCLQLYEVLTS*
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.7
0.78
0.9
77
41.9
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032967
49130335 - 49201835
71501
ENSAPLT00000024089
49130335 - 49202602
72268