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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49138969_49148241_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49138969 - 49148241
Intron Length:
9273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCAACAC
U12 Branch Point Sequence:
TCTGGCGTGACT
Flanking Amino Acid:
IDAVCLQLYEL*
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
42.4
-0.4
1.1
43
37.8
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
46.2
-0.2
2.5
70.37
47.1

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034783
49138963 - 49202602
63640