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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49148326_49148842_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49148326 - 49148842
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTCTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TACTTCTTATTT
Flanking Amino Acid:
ERKELNIEPTDLMNREKKNK
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.3
0.88
0.7
84.8
28.8
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
63.8
0.51
1.6
76.26
41

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024089
49130335 - 49202602
72268
ENSAPLT00000036387
49140636 - 49270648
130013
ENSAPLT00000018437
49143925 - 49270648
126724
ENSAPLT00000034783
49138963 - 49202602
63640
ENSAPLT00000013714
49144819 - 49202602
57784
ENSAPLT00000032967
49130335 - 49201835
71501
ENSAPLT00000027939
49143925 - 49202602
58678
ENSAPLT00000043669
49146517 - 49202602
56086