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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49149560_49151017_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49149560 - 49151017
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATTCATAATT
Flanking Amino Acid:
WEDPMQKELFLAMLMTACDL
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
64.5
0.53
1.6
78.87
36.9

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013714
49144819 - 49202602
57784
ENSAPLT00000032967
49130335 - 49201835
71501
ENSAPLT00000027939
49143925 - 49202602
58678
ENSAPLT00000043669
49146517 - 49202602
56086
ENSAPLT00000024089
49130335 - 49202602
72268
ENSAPLT00000036387
49140636 - 49270648
130013
ENSAPLT00000018437
49143925 - 49270648
126724
ENSAPLT00000034783
49138963 - 49202602
63640