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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49151096_49151184_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49151096 - 49151184
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATCTTTTAACT
Flanking Amino Acid:
ILATDLALYIKRRGEFFELL
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.5
0.62
1
78.4
33.3
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
71.8
0.76
1.1
80.75
34.3

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027939
49143925 - 49202602
58678
ENSAPLT00000043669
49146517 - 49202602
56086
ENSAPLT00000024089
49130335 - 49202602
72268
ENSAPLT00000036387
49140636 - 49270648
130013
ENSAPLT00000018437
49143925 - 49270648
126724
ENSAPLT00000034783
49138963 - 49202602
63640
ENSAPLT00000013714
49144819 - 49202602
57784
ENSAPLT00000032967
49130335 - 49201835
71501