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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49152509_49155920_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49152509 - 49155920
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTCTCCATCT
Flanking Amino Acid:
HRGVNNSYIQRSEHPLAQLY
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.8
0.85
0.7
85.4
29.3
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
48.6
-0
2.1
75.5
41.1

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024089
49130335 - 49202602
72268
ENSAPLT00000036387
49140636 - 49270648
130013
ENSAPLT00000018437
49143925 - 49270648
126724
ENSAPLT00000034783
49138963 - 49202602
63640
ENSAPLT00000013714
49144819 - 49202602
57784
ENSAPLT00000032967
49130335 - 49201835
71501
ENSAPLT00000027939
49143925 - 49202602
58678
ENSAPLT00000043669
49146517 - 49202602
56086