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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49156016_49159619_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49156016 - 49159619
Intron Length:
3604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAAAG
5'SS Class:
major
3'SS Sequence:
TCTTTGCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTCCTGTATCT
Flanking Amino Acid:
LVQNFQMKHESKLTDLETLA
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.1
40.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74.7
0.56
0.9
69.6
35.9
Minor 5ss
31.1
-2.2
3.2
39.5
46
Minor BPS
48.3
-0
2.2
72.72
44.5

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013714
49144819 - 49202602
57784