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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49177694_49187112_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49177694 - 49187112
Intron Length:
9419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGAATACACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CCCTTTTGAATA
Flanking Amino Acid:
CMPIKNHREEVVGVAQAINK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
57.6
0.17
1
49.8
43.4
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
50.4
0.01
1.4
54.42
39.6

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013714
49144819 - 49202602
57784
ENSAPLT00000032967
49130335 - 49201835
71501
ENSAPLT00000027939
49143925 - 49202602
58678
ENSAPLT00000043669
49146517 - 49202602
56086
ENSAPLT00000024089
49130335 - 49202602
72268
ENSAPLT00000036387
49140636 - 49270648
130013
ENSAPLT00000018437
49143925 - 49270648
126724
ENSAPLT00000034783
49138963 - 49202602
63640