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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49189224_49201809_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49189224 - 49201809
Intron Length:
12586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
MLPFGDKTREMVNAWFAE
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032967
49130335 - 49201835
71501