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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49189224_49202498_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49189224 - 49202498
Intron Length:
13275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
ARSYFVRKATREMVNAWFAE
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
PDE5A
Ensembl Gene ID:
ENSAPLG00000013130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034783
49138963 - 49202602
63640
ENSAPLT00000027939
49143925 - 49202602
58678
ENSAPLT00000024089
49130335 - 49202602
72268
ENSAPLT00000013714
49144819 - 49202602
57784
ENSAPLT00000043669
49146517 - 49202602
56086