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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49279613_49282345_F

Intron Information:

Intron Rank:
144688
Intron Class:
major
Intron Phase:
Intron Coordinates:
49279613 - 49282345
Intron Length:
2733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTTTGCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72
0.5
1
64.2
41.7
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
47.2
-0.2
2.1
62.78
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020375
49279406 - 49284129
4724