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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49282445_49282541_F

Intron Information:

Intron Rank:
144689
Intron Class:
major
Intron Phase:
Intron Coordinates:
49282445 - 49282541
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAACCCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.5
0.82
0.8
80.4
31.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
65.3
0.56
1.4
75.96
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020375
49279406 - 49284129
4724