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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49305322_49305855_F

Intron Information:

Intron Rank:
131827
Intron Class:
major
Intron Phase:
Intron Coordinates:
49305322 - 49305855
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGATTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.5
39.2
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
35.7
-1.6
3.1
39.1
46.1
Minor BPS
61
0.42
1.8
84.33
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035528
49300086 - 49306915
6830