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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49308063_49309152_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49308063 - 49309152
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
CTTCTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CGTTTCTTATTC
Flanking Amino Acid:
AKQALLDKRKYQKGKQIQFK
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.2
0.66
0.8
77.2
31.6
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
59.8
0.29
1.6
66.16
40.1

Associated Gene:

Gene:
RPL7L1
Ensembl Gene ID:
ENSAPLG00000013503
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014101
49307811 - 49310817
3007