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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49309317_49309491_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49309317 - 49309491
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTGATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTCTGATTC
Flanking Amino Acid:
HKLAFVVRIAEIRGVSVKVR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
69.2
41.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.7
0.74
0.9
81.5
35.2
Minor 5ss
36.5
-1.5
3.1
46.2
42.8
Minor BPS
60.8
0.32
1.7
74.67
36.2

Associated Gene:

Gene:
RPL7L1
Ensembl Gene ID:
ENSAPLG00000013503
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014101
49307811 - 49310817
3007